Search | Virtual Health Library

1.

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.

Ren, Xianwen; Wen, Wen; Fan, Xiaoying; Hou, Wenhong; Su, Bin; Cai, Pengfei; Li, Jiesheng; Liu, Yang; Tang, Fei; Zhang, Fan; Yang, Yu; He, Jiangping; Ma, Wenji; He, Jingjing; Wang, Pingping; Cao, Qiqi; Chen, Fangjin; Chen, Yuqing; Cheng, Xuelian; Deng, Guohong; Deng, Xilong; Ding, Wenyu; Feng, Yingmei; Gan, Rui; Guo, Chuang; Guo, Weiqiang; He, Shuai; Jiang, Chen; Liang, Juanran; Li, Yi-Min; Lin, Jun; Ling, Yun; Liu, Haofei; Liu, Jianwei; Liu, Nianping; Liu, Shu-Qiang; Luo, Meng; Ma, Qiang; Song, Qibing; Sun, Wujianan; Wang, GaoXiang; Wang, Feng; Wang, Ying; Wen, Xiaofeng; Wu, Qian; Xu, Gang; Xie, Xiaowei; Xiong, Xinxin; Xing, Xudong; Xu, Hao.

Cell ; 184(7): 1895-1913.e19, 2021 04 01.

Article in English | MEDLINE | ID: mdl-33657410

2.

Multi-organ proteomic landscape of COVID-19 autopsies.

Nie, Xiu; Qian, Liujia; Sun, Rui; Huang, Bo; Dong, Xiaochuan; Xiao, Qi; Zhang, Qiushi; Lu, Tian; Yue, Liang; Chen, Shuo; Li, Xiang; Sun, Yaoting; Li, Lu; Xu, Luang; Li, Yan; Yang, Ming; Xue, Zhangzhi; Liang, Shuang; Ding, Xuan; Yuan, Chunhui; Peng, Li; Liu, Wei; Yi, Xiao; Lyu, Mengge; Xiao, Guixiang; Xu, Xia; Ge, Weigang; He, Jiale; Fan, Jun; Wu, Junhua; Luo, Meng; Chang, Xiaona; Pan, Huaxiong; Cai, Xue; Zhou, Junjie; Yu, Jing; Gao, Huanhuan; Xie, Mingxing; Wang, Sihua; Ruan, Guan; Chen, Hao; Su, Hua; Mei, Heng; Luo, Danju; Zhao, Dashi; Xu, Fei; Li, Yan; Zhu, Yi; Xia, Jiahong; Hu, Yu.

Cell ; 184(3): 775-791.e14, 2021 02 04.

Article in English | MEDLINE | ID: mdl-33503446

3.

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.

Ren, Xianwen; Wen, Wen; Fan, Xiaoying; Hou, Wenhong; Su, Bin; Cai, Pengfei; Li, Jiesheng; Liu, Yang; Tang, Fei; Zhang, Fan; Yang, Yu; He, Jiangping; Ma, Wenji; He, Jingjing; Wang, Pingping; Cao, Qiqi; Chen, Fangjin; Chen, Yuqing; Cheng, Xuelian; Deng, Guohong; Deng, Xilong; Ding, Wenyu; Feng, Yingmei; Gan, Rui; Guo, Chuang; Guo, Weiqiang; He, Shuai; Jiang, Chen; Liang, Juanran; Li, Yi-Min; Lin, Jun; Ling, Yun; Liu, Haofei; Liu, Jianwei; Liu, Nianping; Liu, Shu-Qiang; Luo, Meng; Ma, Qiang; Song, Qibing; Sun, Wujianan; Wang, GaoXiang; Wang, Feng; Wang, Ying; Wen, Xiaofeng; Wu, Qian; Xu, Gang; Xie, Xiaowei; Xiong, Xinxin; Xing, Xudong; Xu, Hao.

Cell ; 184(23): 5838, 2021 Nov 11.

Article in English | MEDLINE | ID: mdl-34767776

4.

Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development.

Cheng, Rui; Xu, Zhaochun; Luo, Meng; Wang, Pingping; Cao, Huimin; Jin, Xiyun; Zhou, Wenyang; Xiao, Lixing; Jiang, Qinghua.

Brief Bioinform ; 23(2)2022 03 10.

Article in English | MEDLINE | ID: mdl-35279714

5.

CBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data.

Ding, Qian; Yang, Wenyi; Luo, Meng; Xu, Chang; Xu, Zhaochun; Pang, Fenglan; Cai, Yideng; Anashkina, Anastasia A; Su, Xi; Chen, Na; Jiang, Qinghua.

Brief Bioinform ; 23(5)2022 09 20.

Article in English | MEDLINE | ID: mdl-35870203

6.

DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data.

Yang, Wenyi; Wang, Pingping; Luo, Meng; Cai, Yideng; Xu, Chang; Xue, Guangfu; Jin, Xiyun; Cheng, Rui; Que, Jinhao; Pang, Fenglan; Yang, Yuexin; Nie, Huan; Jiang, Qinghua; Liu, Zhigang; Xu, Zhaochun.

Bioinformatics ; 39(10)2023 10 03.

Article in English | MEDLINE | ID: mdl-37740953

7.

Progress on network modeling and analysis of gut microecology: a review.

Luo, Meng; Zhu, Jinlin; Jia, Jiajia; Zhang, Hao; Zhao, Jianxin.

Appl Environ Microbiol ; 90(3): e0009224, 2024 Mar 20.

Article in English | MEDLINE | ID: mdl-38415584

8.

Unveiling the transferability of PLSR models for leaf trait estimation: lessons from a comprehensive analysis with a novel global dataset.

Ji, Fujiang; Li, Fa; Hao, Dalei; Shiklomanov, Alexey N; Yang, Xi; Townsend, Philip A; Dashti, Hamid; Nakaji, Tatsuro; Kovach, Kyle R; Liu, Haoran; Luo, Meng; Chen, Min.

New Phytol ; 2024 May 06.

Article in English | MEDLINE | ID: mdl-38708434

9.

Adsorption of active polymers on attractive nanoparticles.

Shen, Yi-Fan; Hu, Han-Xian; Luo, Meng-Bo.

Soft Matter ; 20(3): 621-628, 2024 Jan 17.

Article in English | MEDLINE | ID: mdl-38131641

10.

Decomposition of methanol-d₄ on Rh nanoclusters supported by thin-film Al₂O₃/NiAl(100) under near-ambient-pressure conditions.

Liao, Guan-Jr; Hsueh, Wen-Hao; Yen, Yu-Hsiang; Shih, Yi-Chan; Wang, Chia-Hsin; Wang, Jeng-Han; Luo, Meng-Fan.

Phys Chem Chem Phys ; 26(6): 5059-5069, 2024 Feb 07.

Article in English | MEDLINE | ID: mdl-38258542

11.

Translocation of two-dimensional active polymers through nanopores using Langevin dynamics simulations.

Hu, Han-Xian; Shen, Yi-Fan; Luo, Meng-Bo.

J Chem Phys ; 160(18)2024 May 14.

Article in English | MEDLINE | ID: mdl-38716854

12.

DeepST: identifying spatial domains in spatial transcriptomics by deep learning.

Xu, Chang; Jin, Xiyun; Wei, Songren; Wang, Pingping; Luo, Meng; Xu, Zhaochun; Yang, Wenyi; Cai, Yideng; Xiao, Lixing; Lin, Xiaoyu; Liu, Hongxin; Cheng, Rui; Pang, Fenglan; Chen, Rui; Su, Xi; Hu, Ying; Wang, Guohua; Jiang, Qinghua.

Nucleic Acids Res ; 50(22): e131, 2022 12 09.

Article in English | MEDLINE | ID: mdl-36250636

13.

Dibutyl phthalate (DBP) promotes Epithelial-Mesenchymal Transition (EMT) to aggravate liver fibrosis into cirrhosis and portal hypertension (PHT) via ROS/TGF-ß1/Snail-1 signalling pathway in adult rats.

Chen, Min; Wu, Guang-Bo; Hua, Shan; Zheng, Lei; Fan, Qiang; Luo, Meng.

Ecotoxicol Environ Saf ; 274: 116124, 2024 Apr 01.

Article in English | MEDLINE | ID: mdl-38503108

14.

Transcriptome analysis of mesenteric arterioles changes and its mechanisms in cirrhotic rats with portal hypertension.

Wu, Guangbo; Chen, Min; Fan, Qiang; Li, Hongjie; Zhao, Zhifeng; Zhang, Chihao; Luo, Meng.

BMC Genomics ; 24(1): 20, 2023 Jan 14.

Article in English | MEDLINE | ID: mdl-36641445

15.

Regional transcriptional vulnerability to basal forebrain functional dysconnectivity in mild cognitive impairment patients.

Ren, Peng; Ding, Wencai; Li, Siyang; Liu, Guiyou; Luo, Meng; Zhou, Wenyang; Cheng, Rui; Li, Yiqun; Wang, Pingping; Li, Zhipeng; Yao, Lifen; Jiang, Qinghua; Liang, Xia.

Neurobiol Dis ; 177: 105983, 2023 02.

Article in English | MEDLINE | ID: mdl-36586468

16.

Acid-Resistant Near-Infrared II Ag₂Se Quantum Dots for Gastrointestinal Imaging.

Yang, Ling-Ling; Zhao, Wei; Liu, Zhen-Ya; Ren, Mengtian; Kong, Juan; Zong, Xia; Luo, Meng-Yao; Tang, Bo; Xie, Jiahongyi; Pang, Dai-Wen; Liu, An-An.

Anal Chem ; 95(42): 15540-15548, 2023 10 24.

Article in English | MEDLINE | ID: mdl-37831785

17.

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles.

Huang, Yan; Wang, Pingping; Zhou, Wenyang; Luo, Meng; Xu, Zhaochun; Cheng, Rui; Xu, Chang; Jin, Xiyun; Li, Yiqun; Jiang, Qinghua.

Brief Bioinform ; 22(6)2021 11 05.

Article in English | MEDLINE | ID: mdl-34254994

18.

DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor.

Xu, Zhaochun; Luo, Meng; Lin, Weizhong; Xue, Guangfu; Wang, Pingping; Jin, Xiyun; Xu, Chang; Zhou, Wenyang; Cai, Yideng; Yang, Wenyi; Nie, Huan; Jiang, Qinghua.

Brief Bioinform ; 22(6)2021 11 05.

Article in English | MEDLINE | ID: mdl-34415016

19.

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing.

Jin, Xiyun; Zhou, Wenyang; Luo, Meng; Wang, Pingping; Xu, Zhaochun; Ma, Kexin; Cao, Huimin; Xu, Chang; Huang, Yan; Cheng, Rui; Xiao, Lixing; Lin, Xiaoyu; Pang, Fenglan; Li, Yiqun; Nie, Huan; Jiang, Qinghua.

Brief Bioinform ; 22(6)2021 11 05.

Article in English | MEDLINE | ID: mdl-34015809

20.

Characterization of Vaginal Microbial Community Dynamics in the Pathogenesis of Incident Bacterial Vaginosis, a Pilot Study.

Elnaggar, Jacob H; Lammons, John W; Taylor, Christopher M; Toh, Evelyn; Ardizzone, Caleb M; Dong, Amy; Aaron, Kristal J; Luo, Meng; Tamhane, Ashutosh; Lefkowitz, Elliot J; Quayle, Alison J; Nelson, David E; Muzny, Christina A.

Sex Transm Dis ; 50(8): 523-530, 2023 08 01.

Article in English | MEDLINE | ID: mdl-37074327

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COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.

Multi-organ proteomic landscape of COVID-19 autopsies.

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas.

Identification of alternative splicing-derived cancer neoantigens for mRNA vaccine development.

CBLRR: a cauchy-based bounded constraint low-rank representation method to cluster single-cell RNA-seq data.

DeepCCI: a deep learning framework for identifying cell-cell interactions from single-cell RNA sequencing data.

Progress on network modeling and analysis of gut microecology: a review.

Unveiling the transferability of PLSR models for leaf trait estimation: lessons from a comprehensive analysis with a novel global dataset.

Adsorption of active polymers on attractive nanoparticles.

Decomposition of methanol-d₄ on Rh nanoclusters supported by thin-film Al₂O₃/NiAl(100) under near-ambient-pressure conditions.

Translocation of two-dimensional active polymers through nanopores using Langevin dynamics simulations.

DeepST: identifying spatial domains in spatial transcriptomics by deep learning.

Dibutyl phthalate (DBP) promotes Epithelial-Mesenchymal Transition (EMT) to aggravate liver fibrosis into cirrhosis and portal hypertension (PHT) via ROS/TGF-ß1/Snail-1 signalling pathway in adult rats.

Transcriptome analysis of mesenteric arterioles changes and its mechanisms in cirrhotic rats with portal hypertension.

Regional transcriptional vulnerability to basal forebrain functional dysconnectivity in mild cognitive impairment patients.

Acid-Resistant Near-Infrared II Ag₂Se Quantum Dots for Gastrointestinal Imaging.

Comprehensive analysis of partial methylation domains in colorectal cancer based on single-cell methylation profiles.

DLpTCR: an ensemble deep learning framework for predicting immunogenic peptide recognized by T cell receptor.

Global characterization of B cell receptor repertoire in COVID-19 patients by single-cell V(D)J sequencing.

Characterization of Vaginal Microbial Community Dynamics in the Pathogenesis of Incident Bacterial Vaginosis, a Pilot Study.